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GetAndAnalysePromoterRegionsFromAListOfMedicagoIDs | From a list of any Medicago truncatula IDs - TIGR TC, MENS, IMGAG, affy, MtOLI16k, etc.-, the workflow retrieves the corresponding IMGAG accessions when possible, get the promoter sequences - 1500bp upstream - and run MEME to identify conserved motifs. | Launch test |
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GetAndScanPromoterRegionsFromAListOfMedicagoIDs | From a list of any Medicago truncatula IDs - TIGR TC, MENS, IMGAG, affy, MtOLI16k, etc.-, the workflow retrieves the corresponding IMGAG accessions when possible, get the promoter sequences - 1500bp upstream - and run 4 different analysis: a Blast and a PatScan to find a particular motif defined by the user, MEME to identify conserved motifs and a multiple alignement using Mutalin. | Launch test |
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FamilyAnalysisFromNucleicSequence |
WARNING : this worflow has for input a xml file, it's a workflow for bioinformatics users. You can also use it (simply) via Nicknames (you can launch it from an identifier) This workflow executes a blastx against Narcisse proteic database, retrieves matching proteins and then aligns these sequences and builds a parcimony tree.The workflow is configured for plant sequence analyses |
Launch test |
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GetAndScanPromoterRegionsFromAListOfMedicagoIDsToUniqueIDs |
From a list of any Medicago truncatula IDs - TIGR TC, MENS, IMGAG, affy, MtOLI16k, etc.-, the workflow retrieves the corresponding IMGAG accessions when possible, get the promoter sequences - 2500bp upstream - and run PatScan to find a particular motif defined by the user. Default parameters are set to: 2500bp for promoter region, TIGR TC to IMGAG v3 for input Nicknames search and MtGI8 output unique IDs |
Launch test |
